You can generally disqualify any PDF file that is a PDF/X or PDF/A file of any type. Illustrator's save as dialog simply doesn't allow for use of PDF standards with the “preserve editing capabilities” option. If a PDF file shows as a PDF/X or PDF/A file in Acrobat, it means that if the PDF file was originally saved with the “preserve editing capabilities” option specified, that it was subsequently modified and that you can't count on what would be opened in Illustrator as matching what you see in Acrobat.
Similarly, if a PDF file's creation and modification date/time stamps don't match, it is indicative that the PDF file was modified subsequent to its creation and that most likely, the preserved editing capabilities if originally specified don't match the current contents of the PDF file.
Generally what you will find inside a PDF file in clear text is
/PieceInfo<</Illustrator
which is the header for the actual Illustrator file format within a PDF file. You can search for that with a text editor (but don't resave the file with such an editor).
However, most importantly, the existence of that preserved editing data doesn't mean that it matches exactly what is in the PDF file. It is only valid if the PDF file's creation and modification date/time stamps match exactly and no edits have been made to the PDF objects themselves.
Generally speaking and with many years of experience with Illustrator and PDF, I would most strongly recommend against trying to use a single PDF file for production and as an Illustrator source file!!! Contrary to what many might tell you, PDF is absolutely not the native file format of Adobe Illustrator. Going back to the late 1990s, a most regrettable decision was made within Adobe to make PDF look like the native Illustrator format (it was a marketing decision), but that wasn't the reality. When you save an Adobe Illustrator document as a .AI what is really created is a shell PDF file with no PDF graphic objects, but with the non-displayable, non-printable PieceInfo private data representing the native Adobe Illustrator page objects.
To be absolutely safe, best practice dictates that you save Adobe Illustrator artwork as .AI files disabling the Create PDF Compatible File option. Use the .AI files for subsequent edit work. When you need a PDF file, use the Save a Copy option, specifying the PDF options you need, especially for PDF/X (most strongly recommend PDF/X-4 for anything that might be destined for printing or a mixture of printing and display).
- Dov