The gear side printed long since I've been running it. The increased sharpness form the new pads is making it more noticeable.
Maybe you have a mechanical problem in that unit. This reminds me of a some what similar issue I had with a web press in about 1985.
The operators set the impression squeeze by using feeler gauges by placing the gauges in the nip and putting the unit impression on. They would set the operator side and the gear side to the same values. Even if they did this correctly, it still indicated that there was too much squeeze on the gear side.
What seemed to happen is that by just putting the unit impression on, when the press was not running, did not fully move the impression cylinder into the proper position on the gear side. It was assumed that the gear engagement itself was preventing the full movement to happen. The final positioning of the impression cylinder would take place when the press actually ran, resulting in the higher squeeze.
This was a specific issue with the design of that press, which was a Chambon press. Anyhow, I designed a special gauge to measure the impression cylinder to bearer height at the point of nip contact and with that it was possible to set the press to get an even running squeeze on both the operator side and the gear side. I was happy to see that the operators continue to use that gauge for years after that time.
I don't know your press design in any detail, but maybe you have a similar problem in just that one unit. Your squeeze measurement when the press is not running might not be what it actually is when the press runs.
Hope this gives you some ideas.