Don,
This is contrary to what you state in this other thread:
http://printplanet.com/forums/quark/15487-font-issues-when-printing-quark-6-5-a-post95735#post95735
where you state:
"The only thing that you need to know is that PMS colors that are spec'd as Spot inside Quark will go to CMYK PANTONE numbers, while PMS colors spec'd as Spot outside of Quark will stay Spot in the PDF. This is no problem since the alternate colorspace in the PDF for the Spot is CMYK (as long as options when exporting are set to CMYK or CMYK and Spot, and NOT As Is)."
I have tried to reproduce the problem with Quark 6.5 in Tiger, but found that with Distiller 8.1.2 running, the spots are preserved (both Quark spec'd and imported ones) even using As Is in the export settings.
Is this a 6.5/7.x difference, or were you using a Distiller earlier than 8.1.2, or is it a Tiger/Leopard difference?
Al