IDK...you can do it with a PS...you're figure by now you could do it with a PDF.
PostScript is a programming language that was developed to control printers AND also provide a way to explain things like shapes and images. PPDs were required. Printer drivers were required. That was how you could make color separations - by selecting a device and printing to it. That is not what you are doing here. You are sending a device independent document to 'some system' - and the PDF would be managed by that system. PDF was designed on purpose to not need device settings inside it, so i could print it with the device settings i require ( which might be different than yours ) - so, while I appreciate what you are wishing for, no one does it that way. Everyone takes incoming PDF files and sets up a system to process them.
Adobe is not in the package design prepress software business - Esko and PaSharp are - and they charge a pretty penny to make the tools prepress folks need for the package design vertical - because - as you can imagine - there are not a lot of folks who need nesting step and repeat and complex trapping for flexo.
Perhaps you could look into CxF - but - it seems to be a bigger issue than that.
Solutions for Packaging Prepress Professionals - Esko
Founder Electronics - PaSharp
What can I say man - you can complain all you like, but that is not what PDF is all about - the GWG is working on solutions, but as of today, it is just a bunch of draft application notes for developers. Until there are a stable specification and a suite of agreed upon test files for RIP developers to process, we are still in lip flapping mode.
See slides 25-27 ( some folks say CxF will be where the screening details go, as they quickly becomes embroiled with how color behaves )
See slides 29-47 - that explains that it is just not screening that we need to exchange in ( or perhaps 'within' ) a PDF..
http://www.gwg.org/wp-content/uploads/The-Future-of-PDF-for-Packaging_GhentWorkgroup_-Print-13.pdf
Hope that helps.