Now this is a *really* good question and highlights the one achilles heel of 6501s in a volume print environment where a reasonable degree of colour *consistency* and accuracy is required. We've not been able to resolve this problem, but are attempting to figure out something along the same lines as you, i.e. a "instrument" method of getting the Gamma adjust more accurate. The issue for us is matching reprints from month to month and it is a PITA and time consuming to match the colour. We also need to know in advance that the job is colour match critical and is a repeat job so that we can go pull the previous pass sheet, which is not easy when you are running many hundreds of jobs a month. We always re-do the gamma when the engineer leaves (some engineers are ok'ish at this and some are terrible) and that makes it more consistent, but nowhere near close enough that we can count on the colour consistency.
With the gamma done to the best of our ability (by eye), I can confirm that the Fiery Calibration and Profiling does not resolve this problem, but obviously it does reduce it.
Having said all that - I've seen similar issues with Indigos and most Xerox machines (a lot of Xerox machines are poor at colour consistency), so KM are not alone in this.
As mentioned, we're actively working on this problem, so are happy to swap results with you.